PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp6g18580
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family GATA
Protein Properties Length: 392aa    MW: 43982.1 Da    PI: 9.3332
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp6g18580genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA603e-19230263134
       GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                Cs C+ttkTplWR+gp+g+k+LCnaCG+++rk +
  Tp6g18580 230 CSDCNTTKTPLWRSGPRGPKSLCNACGIRQRKAR 263
                *******************************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004011.1E-20224276IPR000679Zinc finger, GATA-type
SuperFamilySSF577166.65E-13224263No hitNo description
Gene3DG3DSA:3.30.50.102.0E-15228263IPR013088Zinc finger, NHR/GATA-type
PROSITE profilePS5011412.466228260IPR000679Zinc finger, GATA-type
CDDcd002029.62E-15229261No hitNo description
PROSITE patternPS003440230255IPR000679Zinc finger, GATA-type
PfamPF003205.8E-17230263IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0009416Biological Processresponse to light stimulus
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0009910Biological Processnegative regulation of flower development
GO:0010187Biological Processnegative regulation of seed germination
GO:0010255Biological Processglucose mediated signaling pathway
GO:0010380Biological Processregulation of chlorophyll biosynthetic process
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 392 aa     Download sequence    Send to blast
MGSNFHYSID LNEDQNHHEQ PFFYPLGSSS SLLHNHHQQH QVPSNSSSSS SSISSLSSYL  60
PFLINSQEDQ HVAYSNTYHA DHLHLSEPLK AKMFNGGSSS SSYDHMVPKK ETRLKLTIRK  120
KDHHEDQTDF LRQNRTKPIS DSDKWLMSPK MRLIKKTIIN NKQPVDHTKD NNNHKEDHYP  180
LNHKTSFEED HDEDLKKVST RTATAAITEN RYNTINENGY ANNNGVIRVC SDCNTTKTPL  240
WRSGPRGPKS LCNACGIRQR KARRAAMAAA AAAGDQEVVV ARLQQLPVKK KLQNKKKRSN  300
GGDKYNLSPV VAKTKKCRIK DEEEADAAMV AGDSEISKST TSSDSSISSN KLCFDDLTIM  360
LSKSSAYQRV FPQDEKEAAI LLMALSYGLV HG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0889530.0AY088953.1 Arabidopsis thaliana clone 110454 mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013653839.10.0PREDICTED: GATA transcription factor 21-like
SwissprotQ5HZ360.0GAT21_ARATH; GATA transcription factor 21
TrEMBLV4LG700.0V4LG70_EUTSA; Uncharacterized protein
STRINGBra002788.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM21092675
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56860.11e-168GATA family protein